Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs72841146 | chr2:70445535 | C/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841148 | chr2:70460311 | C/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841149 | chr2:70461578 | G/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841153 | chr2:70474259 | T/C | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841154 | chr2:70474377 | C/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841156 | chr2:70475827 | T/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841157 | chr2:70476253 | T/C | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841162 | chr2:70488877 | C/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841171 | chr2:70512313 | A/G | 0 | 177 | 15.37 | 17.32 | 1.03 | KM Plot |
| PAAD | rs72841174 | chr2:70527022 | G/A | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72841176 | chr2:70538012 | G/T | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs72849437 | chr17:70631124 | T/C | 3.46E-6 | 170 | 14.47 | 16.6 | 5.1 | KM Plot |
| PAAD | rs72860383 | chr17:73850317 | G/A | 1.35E-9 | 174 | 15.67 | 10.02 | 2.2 | KM Plot |
| PAAD | rs7288540 | chr22:47797070 | C/T | 4.94E-5 | 173 | 15.57 | 15.4 | 4 | KM Plot |
| PAAD | rs72901551 | chr2:54535333 | A/T | 1.78E-6 | 175 | 14.67 | 20.23 | 3.43 | KM Plot |